Stem-loop sfr-mir-34

Accession

MI0033600

Description

Spodoptera frugiperda sfr-mir-34 precursor miRNA

Literature search

3 open access papers mention sfr-mir-34
(41 sentences)

Sequence

25591 reads, 1291.0 reads per million, 41 experiments

agguaguccgcguUGGCAGUGUGGUUAGCUGGUUGUUuaaauugcuacaacAGCCAGUAACGACACUGCCUCCgcgugcuaccu
(((((((.((((..((((((((.((((.(((((((((...........))))))))))))).))))))))..)))).)))))))

Structure

       c    uU        G    G         uaaa 
agguagu cgcg  GGCAGUGU GUUA CUGGUUGUU    u
||||||| ||||  |||||||| |||| |||||||||    u
uccaucg gcgC  CCGUCACA CAAU GACCGAcaa    g
       u    CU        G    -         cauc 

Annotation confidence High

Genome context

JQCY02003144.1: 38956-39039 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sfr-mir-34

Mature sfr-miR-34-5p

• Accession: MIMAT0041878
• Description: Spodoptera frugiperda sfr-miR-34-5p mature miRNA
• Sequence: 14 - UGGCAGUGUGGUUAGCUGGUUGUU - 37
• Evidence: experimental ; Illumina [1]

Mature sfr-miR-34-3p

• Accession: MIMAT0041879
• Description: Spodoptera frugiperda sfr-miR-34-3p mature miRNA
• Sequence: 52 - AGCCAGUAACGACACUGCCUCC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25693181
   Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
   Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
   PLoS One (2015) 10:e0116988