Stem-loop sfr-mir-317

Accession

MI0033603

Description

Spodoptera frugiperda sfr-mir-317 precursor miRNA

Literature search

1 open access papers mention sfr-mir-317
(1 sentences)

Sequence

gaacgaccGGGUGCCACGCUGUGCUCUCUcgggaauuaaugcagagUGAACACAGCUGGUGGUAUCUcaguuguuc
(((((((.(((((((((((((((.((.(((.............))).)).))))))..)))))))))..)))))))

Structure

       -c         --      C  U   gggaa 
gaacgac  GGGUGCCAC  GCUGUG UC CUc     u
|||||||  |||||||||  |||||| || |||     u
cuuguug  UCUAUGGUG  CGACAC AG gag     a
       ac         GU      A  U   acgua 

Annotation confidence Not enough data

Genome context

JQCY02003144.1: 10491-10566 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sfr-mir-317

Mature sfr-miR-317-5p

• Accession: MIMAT0041884
• Description: Spodoptera frugiperda sfr-miR-317-5p mature miRNA
• Sequence: 9 - GGGUGCCACGCUGUGCUCUCU - 29
• Evidence: experimental ; Illumina [1]

Mature sfr-miR-317-3p

• Accession: MIMAT0041885
• Description: Spodoptera frugiperda sfr-miR-317-3p mature miRNA
• Sequence: 47 - UGAACACAGCUGGUGGUAUCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25693181
   Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
   Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
   PLoS One (2015) 10:e0116988