miRBase entry: sfr-mir-10505-1

Stem-loop sfr-mir-10505-1

Accession

MI0033641

Description

Spodoptera frugiperda sfr-mir-10505-1 precursor miRNA

Sequence

UGUAGAGCCAAGUUUCUAACCcuauacuuuugaacuggcgaguuggccgcacggaaagauacuuuuuaagaaaacggacuuuuugcuauucgucauaugggcuugagcuuaaaaaucuauucaaucuucuaaacucuuuccgugcggccaacucgccgguucaaaaguaUAGGGUUAGAAACUUGGCUCuaca
(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((...(((..((((.((.(((.((((.(((....(((.....)))...)))..)))).))).))...))))..))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                           uac   uu    --a  c   c    -u   auuc   a 
UGUAGAGCCAAGUUUCUAACCcuauacuuuugaacuggcgaguuggccgcacggaaaga   uuu  aaga   aa gga uuuu  gcu    guc u
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||  ||||   || ||| ||||  |||    ||| a
acauCUCGGUUCAAAGAUUGGGAUaugaaaacuuggccgcucaaccggcgugccuuucu   aaa  uucu   uu ucu aaaa  cga    cgg u
                                                           --c   uc    aac  a   a    uu   -guu   g

Annotation confidence Not enough data

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Genome context

JQCY02034919.1: 2-194 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sfr-mir-10505-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature sfr-miR-10505-5p

Accession	MIMAT0041950
Description	Spodoptera frugiperda sfr-miR-10505-5p mature miRNA
Sequence	1 - UGUAGAGCCAAGUUUCUAACC - 21
Evidence	experimental Illumina [1]

Mature sfr-miR-10505-3p

Accession	MIMAT0041951
Description	Spodoptera frugiperda sfr-miR-10505-3p mature miRNA
Sequence	170 - UAGGGUUAGAAACUUGGCUC - 189
Evidence	experimental Illumina [1]

References

PubMed ID: 25693181
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
PLoS One (2015) 10:e0116988