Stem-loop abu-mir-100-1

Accession

MI0033716

Description

Astatotilapia burtoni abu-mir-100-1 precursor miRNA

Sequence

359948 reads, 113650.0 reads per million, 1 experiments

AACCCGUAGAUCCGAACUUGUGuuaagugacaccaCAAGCUUGUAUCUACAGGUCUG
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure

--A   C      C   A      uuaa 
   ACC GUAGAU CGA CUUGUG    g
   ||| |||||| ||| ||||||    u
   UGG CAUCUA GUU GAACac    g
GUC   A      U   C      caca 

Annotation confidence High

Genome context

JH425444.1: 108880-108936 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-100-1

Mature abu-miR-100-5p

• Accession: MIMAT0042041
• Description: Astatotilapia burtoni abu-miR-100-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-100-1-3p

• Accession: MIMAT0059782
• Description: Astatotilapia burtoni abu-miR-100-1-3p mature miRNA
• Sequence: 36 - CAAGCUUGUAUCUACAGGUCUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381