miRBase entry: abu-mir-100-1

Accession

MI0033716

Description

Astatotilapia burtoni abu-mir-100-1 precursor miRNA

Sequence

AACCCGUAGAUCCGAACUUGUGuuaagugacaccacaagcuuguaucuacaggucug
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure

--A   C      C   A      uuaa 
   ACC GUAGAU CGA CUUGUG    g
   ||| |||||| ||| ||||||    u
   ugg caucua guu gaacac    g
guc   a      u   c      caca

Annotation confidence Not enough data

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Genome context

JH425444.1: 108880-108936 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-100-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Accession	MIMAT0042041
Description	Astatotilapia burtoni abu-miR-100 mature miRNA
Sequence	1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence	experimental Illumina [1]

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381