Stem-loop abu-mir-100-2

Accession

MI0033717

Description

Astatotilapia burtoni abu-mir-100-2 precursor miRNA

Sequence

243943 reads, 77023.0 reads per million, 1 experiments

AACCCGUAGAUCCGAACUUGUGgugacuggcugcaCAAGCUCGUAUCUAUAGGUAUG
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure

--A   C      C   A      guga 
   ACC GUAGAU CGA CUUGUG    c
   ||| |||||| ||| ||||||    u
   UGG UAUCUA GCU GAACac    g
GUA   A      U   C      gucg 

Annotation confidence High

Genome context

JH425368.1: 1258627-1258683 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-100-2

Mature abu-miR-100-5p

• Accession: MIMAT0042041
• Description: Astatotilapia burtoni abu-miR-100-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-100-2-3p

• Accession: MIMAT0059783
• Description: Astatotilapia burtoni abu-miR-100-2-3p mature miRNA
• Sequence: 36 - CAAGCUCGUAUCUAUAGGUAUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381