Stem-loop abu-mir-192

Accession

MI0033718

Description

Astatotilapia burtoni abu-mir-192 precursor miRNA

Literature search

1 open access papers mention abu-mir-192
(1 sentences)

Sequence

235061 reads, 74218.0 reads per million, 1 experiments

AUGACCUAUGAAUUGACAGCCagugauuuccagccucugCCUGUCAGUUCUGUAGGCCACU
.((.(((((((((((((((.(((.(.........).))).)))))))))).))))).))..

Structure

-A  A     -          C   u auu 
  UG CCUAU GAAUUGACAG Cag g   u
  || ||||| |||||||||| ||| |   c
  AC GGAUG CUUGACUGUC guc c   c
UC  C     U          C   u cga 

Annotation confidence High

Genome context

JH425458.1: 831441-831501 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-192

Mature abu-miR-192-5p

• Accession: MIMAT0042042
• Description: Astatotilapia burtoni abu-miR-192-5p mature miRNA
• Sequence: 1 - AUGACCUAUGAAUUGACAGCC - 21
• Evidence: experimental ; Illumina [1]

Mature abu-miR-192-3p

• Accession: MIMAT0059784
• Description: Astatotilapia burtoni abu-miR-192-3p mature miRNA
• Sequence: 40 - CCUGUCAGUUCUGUAGGCCACU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381