miRBase entry: abu-mir-192

Stem-loop abu-mir-192

Accession

MI0033718

Description

Astatotilapia burtoni abu-mir-192 precursor miRNA

Sequence

AUGACCUAUGAAUUGACAGCCagugauuuccagccucugccugucaguucuguaggccacu
.((.(((((((((((((((.(((.(.........).))).)))))))))).))))).))..

Structure

-A  A     -          C   u auu 
  UG CCUAU GAAUUGACAG Cag g   u
  || ||||| |||||||||| ||| |   c
  ac ggaug cuugacuguc guc c   c
uc  c     u          c   u cga

Annotation confidence Not enough data

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Genome context

JH425458.1: 831441-831501 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-192

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-192

Accession	MIMAT0042042
Description	Astatotilapia burtoni abu-miR-192 mature miRNA
Sequence	1 - AUGACCUAUGAAUUGACAGCC - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381