Stem-loop abu-mir-9-1

Accession

MI0033721

Description

Astatotilapia burtoni abu-mir-9-1 precursor miRNA

Sequence

68762 reads, 21711.0 reads per million, 1 experiments

UCUUUGGUUAUCUAGCUGUAUGaguuuauguaauaucaUAAAGCUAGAGAACCGAAUGUAU
..(((((((.(((((((.(((((..((....))..))))).))))))).))))))).....

Structure

---UC       A       G     gu  a 
     UUUGGUU UCUAGCU UAUGa  uu u
     ||||||| ||||||| |||||  ||  
     AAGCCAA AGAUCGA AUacu  aa g
UAUGU       G       A     au  u 

Annotation confidence High

Genome context

JH425359.1: 416325-416385 [+]

Mature abu-miR-9-5p

• Accession: MIMAT0042045
• Description: Astatotilapia burtoni abu-miR-9-5p mature miRNA
• Sequence: 1 - UCUUUGGUUAUCUAGCUGUAUG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-9-1-3p

• Accession: MIMAT0059785
• Description: Astatotilapia burtoni abu-miR-9-1-3p mature miRNA
• Sequence: 39 - UAAAGCUAGAGAACCGAAUGUAU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381