Stem-loop abu-mir-199-2

Accession

MI0033733

Description

Astatotilapia burtoni abu-mir-199-2 precursor miRNA

Sequence

CCCAGUGUUCAGACUACCUGUUcauugucauacugguguACAGUAGUCUGCACAUUGGUUa
.(((((((.((((((((.(((.((((........)))).))))))))))).)))))))...

Structure

--C       U        C   U    guc 
   CCAGUGU CAGACUAC UGU cauu   a
   ||||||| |||||||| ||| ||||    
   GGUUACA GUCUGAUG ACA gugg   u
aUU       C        -   u    uca 

Annotation confidence Not enough data

Genome context

JH425511.1: 199712-199772 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-199-2

Mature abu-miR-199-5p

• Accession: MIMAT0042050
• Description: Astatotilapia burtoni abu-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-199-3p

• Accession: MIMAT0042051
• Description: Astatotilapia burtoni abu-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381