miRBase entry: abu-mir-199-2

Stem-loop abu-mir-199-2

Accession

MI0033733

Description

Astatotilapia burtoni abu-mir-199-2 precursor miRNA

Sequence

CCCAGUGUUCAGACUACCUGUUcauugucauacugguguACAGUAGUCUGCACAUUGGUUa
.(((((((.((((((((.(((.((((........)))).))))))))))).)))))))...

Structure

--C       U        C   U    guc 
   CCAGUGU CAGACUAC UGU cauu   a
   ||||||| |||||||| ||| ||||    
   GGUUACA GUCUGAUG ACA gugg   u
aUU       C        -   u    uca

Annotation confidence Not enough data

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Genome context

JH425511.1: 199712-199772 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-199-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-199-5p

Accession	MIMAT0042050
Description	Astatotilapia burtoni abu-miR-199-5p mature miRNA
Sequence	1 - CCCAGUGUUCAGACUACCUGUU - 22
Evidence	experimental Illumina [1]

Mature abu-miR-199-3p

Accession	MIMAT0042051
Description	Astatotilapia burtoni abu-miR-199-3p mature miRNA
Sequence	40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381