Stem-loop abu-mir-133a-1

Accession

MI0033744

Description

Astatotilapia burtoni abu-mir-133a-1 precursor miRNA

Sequence

26351 reads, 8320.0 reads per million, 1 experiments

AGCUGGUAAAAUGGAACCAAAUcaacuguucaauggauUUGGUCCCCUUCAACCAGCUGU
(((((((..((.((.((((((((............)))))))).)).))..)))))))..

Structure

--       AA  U  A        aacug 
  AGCUGGU  AA GG ACCAAAUc     u
  |||||||  || || ||||||||      
  UCGACCA  UU CC UGGUUuag     u
UG       AC  C  C        guaac 

Annotation confidence High

Genome context

JH426169.1: 63878-63937 [+]

Mature abu-miR-133a-5p

• Accession: MIMAT0059790
• Description: Astatotilapia burtoni abu-miR-133a-5p mature miRNA
• Sequence: 1 - AGCUGGUAAAAUGGAACCAAAU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-133a-3p

• Accession: MIMAT0042055
• Description: Astatotilapia burtoni abu-miR-133a-3p mature miRNA
• Sequence: 39 - UUGGUCCCCUUCAACCAGCUGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381