miRBase entry: abu-let-7a-3

Stem-loop abu-let-7a-3

Accession

MI0033747

Description

Astatotilapia burtoni abu-let-7a-3 precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUAGUUuggugggugggacugcacccugcucaggugauaacuauacagucuauugccuuccc
.(((((((((((((((((((((...((((((((.......))))))))......)))))))))))))))))))))...

Structure

--U                     ---ugg        ac 
   GAGGUAGUAGGUUGUAUAGUU      uggguggg  u
   |||||||||||||||||||||      ||||||||  g
   uuccguuaucugacauaucaa      acucgucc  c
ccc                     uagugg        ca

Annotation confidence Not enough data

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Genome context

JH425329.1: 1039088-1039165 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-let-7a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-let-7a

Accession	MIMAT0042056
Description	Astatotilapia burtoni abu-let-7a mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381