miRBase entry: abu-let-7a-4

Stem-loop abu-let-7a-4

Accession

MI0033748

Description

Astatotilapia burtoni abu-let-7a-4 precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUAGUUuuagggucauacccacacugggagauaacuauucaaccuacugucuuucc
.((((((((((((((.((((((.....(((...((((...)))).))))))))).))))))))))))))...

Structure

--U              U      uuagg   aua    c 
   GAGGUAGUAGGUUG AUAGUU     guc   ccca  
   |||||||||||||| ||||||     |||   |||| a
   uucugucauccaac uaucaa     uag   gggu  
ccu              u      -----   --a    c

Annotation confidence Not enough data

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Genome context

JH425848.1: 317552-317623 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-let-7a-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-let-7a

Accession	MIMAT0042056
Description	Astatotilapia burtoni abu-let-7a mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381