Stem-loop abu-let-7a-4

Accession

MI0033748

Description

Astatotilapia burtoni abu-let-7a-4 precursor miRNA

Sequence

33636 reads, 10620.0 reads per million, 1 experiments

UGAGGUAGUAGGUUGUAUAGUUuuagggucauacccacacugggagauaaCUAUUCAACCUACUGUCUUUCc
.((((((((((((((.((((((.....(((...((((...)))).))))))))).))))))))))))))...

Structure

--U              U      uuagg   aua    c 
   GAGGUAGUAGGUUG AUAGUU     guc   ccca  
   |||||||||||||| ||||||     |||   |||| a
   UUCUGUCAUCCAAC UAUCaa     uag   gggu  
cCU              U      -----   --a    c 

Annotation confidence High

Genome context

JH425848.1: 317552-317623 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-let-7a-4

Mature abu-let-7a-5p

• Accession: MIMAT0042056
• Description: Astatotilapia burtoni abu-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-let-7a-4-3p

• Accession: MIMAT0059794
• Description: Astatotilapia burtoni abu-let-7a-4-3p mature miRNA
• Sequence: 51 - CUAUUCAACCUACUGUCUUUC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381