Stem-loop abu-let-7a-1

Accession

MI0033750

Description

Astatotilapia burtoni abu-let-7a-1 precursor miRNA

Sequence

16596 reads, 5240.0 reads per million, 1 experiments

UGAGGUAGUAGGUUGUAUAGUUgagaauuacaccccgggagauaaCUGUACAACCUCCUAGCUUUCC
.(((.(((.((((((((((((((...................)))))))))))))).))).)))...

Structure

--U   G   U              agaauuac 
   GAG UAG AGGUUGUAUAGUUg        a
   ||| ||| ||||||||||||||        c
   UUC AUC UCCAACAUGUCaau        c
CCU   G   C              agagggcc 

Annotation confidence High

Genome context

JH425444.1: 107232-107298 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from abu-let-7a-1

Mature abu-let-7a-5p

• Accession: MIMAT0042056
• Description: Astatotilapia burtoni abu-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-let-7a-1-3p

• Accession: MIMAT0059792
• Description: Astatotilapia burtoni abu-let-7a-1-3p mature miRNA
• Sequence: 46 - CUGUACAACCUCCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381