Stem-loop abu-mir-22a

Accession

MI0033758

Description

Astatotilapia burtoni abu-mir-22a precursor miRNA

Sequence

12222 reads, 3859.0 reads per million, 1 experiments

AGUUCUUCACUGGCAAGCUUUAUGuccucauguaccagcuaAAGCUGCCAGCUGAAGAACUGU
(((((((((((((((.((((((.((............)))))))))))))).)))))))))..

Structure

--         -      A      U  ccuca 
  AGUUCUUCA CUGGCA GCUUUA Gu     u
  ||||||||| |||||| |||||| ||      
  UCAAGAAGU GACCGU CGAAau cg     g
UG         C      -      -  accau 

Annotation confidence High

Genome context

JH425333.1: 2859179-2859241 [-]

Mature abu-miR-22a-5p

• Accession: MIMAT0059800
• Description: Astatotilapia burtoni abu-miR-22a-5p mature miRNA
• Sequence: 1 - AGUUCUUCACUGGCAAGCUUUAUG - 24
• Evidence: experimental ; Illumina [1]

Mature abu-miR-22a-3p

• Accession: MIMAT0042063
• Description: Astatotilapia burtoni abu-miR-22a-3p mature miRNA
• Sequence: 42 - AAGCUGCCAGCUGAAGAACUGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381