Stem-loop abu-mir-25

Accession

MI0033761

Description

Astatotilapia burtoni abu-mir-25 precursor miRNA

Sequence

9166 reads, 2894.0 reads per million, 1 experiments

AGGCGGAGACUUGGGCAAUUGCCgggcaucccagagggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((.((((((...)))....)))))))).)..))))).))))..

Structure

--    G     UU G     U   ----   c 
  AGGC GAGAC  G GCAAU GCC    ggg  
  |||| |||||  | ||||| |||    ||| a
  UCUG CUCUG  C CGUUA Cgg    ccc  
AG    G     UU A     -   gaga   u 

Annotation confidence High

Genome context

JH425502.1: 77728-77787 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-25

Mature abu-miR-25-5p

• Accession: MIMAT0059801
• Description: Astatotilapia burtoni abu-miR-25-5p mature miRNA
• Sequence: 1 - AGGCGGAGACUUGGGCAAUUGCC - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-25-3p

• Accession: MIMAT0042067
• Description: Astatotilapia burtoni abu-miR-25-3p mature miRNA
• Sequence: 39 - CAUUGCACUUGUCUCGGUCUGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381