miRBase entry: abu-let-7d-1

Stem-loop abu-let-7d-1

Accession

MI0033764

Description

Astatotilapia burtoni abu-let-7d-1 precursor miRNA

Sequence

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaacagcauggagauaacuguacaaccuucuagcuuucc
.(((.(((..((((((((((((((.(((..........)))..)).))))))))))))..))).)))...

Structure

--U   G   UU            -  -g   aaua 
   GAG UAG  GGUUGUAUGGUU uc  cau    a
   ||| |||  |||||||||||| ||  |||     
   uuc auc  ccaacaugucaa ag  gua    a
ccu   g   uu            u  ag   cgac

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH425385.1: 80255-80324 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-let-7d-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-let-7d

Accession	MIMAT0042070
Description	Astatotilapia burtoni abu-let-7d mature miRNA
Sequence	1 - UGAGGUAGUUGGUUGUAUGGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381