miRBase entry: abu-let-7d-2

Stem-loop abu-let-7d-2

Accession

MI0033765

Description

Astatotilapia burtoni abu-let-7d-2 precursor miRNA

Sequence

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaaaagccuggagauaacuguacaaccuucuagcuuucc
.(((.(((..((((((((((((((...................)).))))))))))))..))).)))...

Structure

--U   G   UU            -  gcauaaua 
   GAG UAG  GGUUGUAUGGUU uc        a
   ||| |||  |||||||||||| ||        a
   uuc auc  ccaacaugucaa ag        a
ccu   g   uu            u  agguccga

Annotation confidence Not enough data

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Genome context

JH425409.1: 300629-300698 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-let-7d-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-let-7d

Accession	MIMAT0042070
Description	Astatotilapia burtoni abu-let-7d mature miRNA
Sequence	1 - UGAGGUAGUUGGUUGUAUGGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381