Stem-loop abu-mir-30b

Accession

MI0033766

Description

Astatotilapia burtoni abu-mir-30b precursor miRNA

Sequence

13289 reads, 4196.0 reads per million, 1 experiments

UGUAAACAUCCUACACUCUCAGCuguguugucauggagCUGGGAGAGGGGUGUUUACGCU
.(((((((((((...(((((((((.(((....))).))))))))).)))))))))))...

Structure

--U           ACA         g   u 
   GUAAACAUCCU   CUCUCAGCu ugu g
   |||||||||||   ||||||||| |||  
   CAUUUGUGGGG   GAGGGUCga gua u
UCG           --A         g   c 

Annotation confidence High

Genome context

JH425340.1: 107873-107932 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-30b

Mature abu-miR-30b-5p

• Accession: MIMAT0042071
• Description: Astatotilapia burtoni abu-miR-30b-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCAGC - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-30b-3p

• Accession: MIMAT0059804
• Description: Astatotilapia burtoni abu-miR-30b-3p mature miRNA
• Sequence: 39 - CUGGGAGAGGGGUGUUUACGCU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381