Stem-loop abu-mir-99b

Accession

MI0033767

Description

Astatotilapia burtoni abu-mir-99b precursor miRNA

Sequence

6879 reads, 2172.0 reads per million, 1 experiments

AACCCGUAGAUCCGAUCUUGUggcgaaucugacagcaCAAGCUCGCCUCUGUGGGUCUU
.(((((((((..(((.((((((.............)))))).)))..)))))))))...

Structure

--A         UC   U      gcgaa 
   ACCCGUAGA  CGA CUUGUg     u
   |||||||||  ||| ||||||     c
   UGGGUGUCU  GCU GAACac     u
UUC         CC   C      gacag 

Annotation confidence High

Genome context

JH425516.1: 687869-687927 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-99b

Mature abu-miR-99b-5p

• Accession: MIMAT0042072
• Description: Astatotilapia burtoni abu-miR-99b-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAUCUUGU - 21
• Evidence: experimental ; Illumina [1]

Mature abu-miR-99b-3p

• Accession: MIMAT0059805
• Description: Astatotilapia burtoni abu-miR-99b-3p mature miRNA
• Sequence: 38 - CAAGCUCGCCUCUGUGGGUCUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381