Stem-loop abu-mir-221-1

Accession

MI0033768

Description

Astatotilapia burtoni abu-mir-221-1 precursor miRNA

Sequence

6152 reads, 1942.0 reads per million, 1 experiments

ACCUGGCAUACAAUGUAGAUUUCUGugugguucaauucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.((......)))))))))))))))).))))))))...

Structure

---        U         AUUU     u  uu 
   ACCUGGCA ACAAUGUAG    CUGug gg  c
   |||||||| |||||||||    ||||| ||   
   UGGGUCGU UGUUACAUC    GAcau cu  a
CUU        C         ----     -  ua 

Annotation confidence High

Genome context

JH425600.1: 562086-562149 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-221-1

Mature abu-miR-221-1-5p

• Accession: MIMAT0059806
• Description: Astatotilapia burtoni abu-miR-221-1-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAAUGUAGAUUUCUG - 25
• Evidence: experimental ; Illumina [1]

Mature abu-miR-221-3p

• Accession: MIMAT0042073
• Description: Astatotilapia burtoni abu-miR-221-3p mature miRNA
• Sequence: 42 - AGCUACAUUGUCUGCUGGGUUUC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381