Stem-loop abu-mir-221-2

Accession

MI0033779

Description

Astatotilapia burtoni abu-mir-221-2 precursor miRNA

Sequence

4611 reads, 1456.0 reads per million, 1 experiments

ACCUGGCAUACAGUGUAGGAAUCUGugugugucagucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.(.......))))))))))))))).))))))))...

Structure

---        U         GAAU     u ug 
   ACCUGGCA ACAGUGUAG    CUGug g  u
   |||||||| |||||||||    ||||| |  c
   UGGGUCGU UGUUACAUC    GAcau c  a
CUU        C         ----     - ug 

Annotation confidence High

Genome context

JH425355.1: 1505333-1505395 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-221-2

Mature abu-miR-221-2-5p

• Accession: MIMAT0059807
• Description: Astatotilapia burtoni abu-miR-221-2-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAGUGUAGGAAUCUG - 25
• Evidence: experimental ; Illumina [1]

Mature abu-miR-221-3p

• Accession: MIMAT0042073
• Description: Astatotilapia burtoni abu-miR-221-3p mature miRNA
• Sequence: 41 - AGCUACAUUGUCUGCUGGGUUUC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381