Stem-loop abu-mir-30d

Accession

MI0033781

Description

Astatotilapia burtoni abu-mir-30d precursor miRNA

Sequence

7959 reads, 2513.0 reads per million, 1 experiments

UGUAAACAUCCUACACUCAGCUguuauugauugccacagaggCUGAGAGGAGGUUGUUUACUUg
.(((((((.(((...(((((((.....((.....))....)))))))...))).)))))))...

Structure

--U       U   ACA       guuau  a 
   GUAAACA CCU   CUCAGCU     ug u
   ||||||| |||   |||||||     || u
   CAUUUGU GGA   GAGUCgg     ac g
gUU       U   GGA       -agac  c 

Annotation confidence High

Genome context

JH426703.1: 11838-11901 [+]

Mature abu-miR-30d-5p

• Accession: MIMAT0042084
• Description: Astatotilapia burtoni abu-miR-30d-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-30d-3p

• Accession: MIMAT0059813
• Description: Astatotilapia burtoni abu-miR-30d-3p mature miRNA
• Sequence: 43 - CUGAGAGGAGGUUGUUUACUU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381