miRBase entry: abu-mir-1388

Stem-loop abu-mir-1388


Accession
MI0033783
Description
Astatotilapia burtoni abu-mir-1388 precursor miRNA


Sequence

3994 reads, 1261.0 reads per million, 1 experiments
AGGACUGUCCAACCUGAGAAUGgugauuauaggcucaAUCUCAGGUUCGUCAGCCCAUG
.((.(((.(.(((((((((.((((........)).)).))))))))).).))).))...

Structure
--A  A   U C         A  -  gau 
   GG CUG C AACCUGAGA UG gu   u
   || ||| | ||||||||| || ||    
   CC GAC G UUGGACUCU ac cg   a
GUA  C   U C         A  u  gau 


Annotation confidence High
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Genome context
JH425456.1: 1274619-1274677 [-]

Database links

Mature abu-miR-1388-5p

Accession MIMAT0042086
Description Astatotilapia burtoni abu-miR-1388-5p mature miRNA
Sequence 1 - AGGACUGUCCAACCUGAGAAUG - 22
Evidence experimental
Illumina [1]

Mature abu-miR-1388-3p

Accession MIMAT0059815
Description Astatotilapia burtoni abu-miR-1388-3p mature miRNA
Sequence 38 - AUCUCAGGUUCGUCAGCCCAUG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381