Stem-loop abu-mir-125b-2

Accession

MI0033788

Description

Astatotilapia burtoni abu-mir-125b-2 precursor miRNA

Literature search

1 open access papers mention abu-mir-125b-2
(1 sentences)

Sequence

3702 reads, 1169.0 reads per million, 1 experiments

UCCCUGAGACCCUAACUUGUGAcguugugcuuucauguccACGGGUUAGGCUCUCGGGAGCU
..(((((((.(((((((((((((((.(......))))).))))))))))).)))))))....

Structure

--UC       C           -    u ug 
    CCUGAGA CCUAACUUGUG Acgu g  c
    ||||||| ||||||||||| |||| |   
    GGGCUCU GGAUUGGGCAc ugua c  u
UCGA       C           c    - uu 

Annotation confidence High

Genome context

JH425444.1: 101810-101871 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from abu-mir-125b-2

Mature abu-miR-125b-5p

• Accession: MIMAT0042091
• Description: Astatotilapia burtoni abu-miR-125b-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUAACUUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-125b-2-3p

• Accession: MIMAT0059820
• Description: Astatotilapia burtoni abu-miR-125b-2-3p mature miRNA
• Sequence: 41 - ACGGGUUAGGCUCUCGGGAGCU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381