Stem-loop abu-mir-214-1

Accession

MI0033790

Description

Astatotilapia burtoni abu-mir-214-1 precursor miRNA

Sequence

3907 reads, 1234.0 reads per million, 1 experiments

UGCCUGUCUACACUUGCUGUGCagaccuucugcuccuguACAGCAGGCACAGACAGGCAGA
(((((((((...((((((((((((...........))))))))))))...)))))))))..

Structure

--         ACA            accu 
  UGCCUGUCU   CUUGCUGUGCag    u
  |||||||||   ||||||||||||    c
  ACGGACAGA   GGACGACAuguc    u
AG         CAC            cucg 

Annotation confidence High

Genome context

JH425376.1: 693115-693175 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-214-1

Mature abu-miR-214-1-5p

• Accession: MIMAT0059823
• Description: Astatotilapia burtoni abu-miR-214-1-5p mature miRNA
• Sequence: 1 - UGCCUGUCUACACUUGCUGUGC - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-214-3p

• Accession: MIMAT0042093
• Description: Astatotilapia burtoni abu-miR-214-3p mature miRNA
• Sequence: 40 - ACAGCAGGCACAGACAGGCAGA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381