Stem-loop abu-mir-214-2

Accession

MI0033792

Description

Astatotilapia burtoni abu-mir-214-2 precursor miRNA

Sequence

3694 reads, 1166.0 reads per million, 1 experiments

UGCCUAUCUACACUUGCUGUGCagaauauccuccaaccuguACAGCAGGCACAGACAGGCAGA
(((((.(((...((((((((((((.............))))))))))))...))).)))))..

Structure

--     A   ACA            aauau 
  UGCCU UCU   CUUGCUGUGCag     c
  ||||| |||   ||||||||||||     c
  ACGGA AGA   GGACGACAuguc     u
AG     C   CAC            caacc 

Annotation confidence Not enough data

Genome context

JH425511.1: 201545-201607 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-214-2

Mature abu-miR-214-2-5p

• Accession: MIMAT0059824
• Description: Astatotilapia burtoni abu-miR-214-2-5p mature miRNA
• Sequence: 1 - UGCCUAUCUACACUUGCUGUGC - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-214-3p

• Accession: MIMAT0042093
• Description: Astatotilapia burtoni abu-miR-214-3p mature miRNA
• Sequence: 42 - ACAGCAGGCACAGACAGGCAGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381