miRBase entry: abu-mir-214-2

Stem-loop abu-mir-214-2

Accession

MI0033792

Description

Astatotilapia burtoni abu-mir-214-2 precursor miRNA

Sequence

ugccuaucuacacuugcugugcagaauauccuccaaccuguACAGCAGGCACAGACAGGCAGA
(((((.(((...((((((((((((.............))))))))))))...))).)))))..

Structure

--     a   aca            aauau 
  ugccu ucu   cuugcugugcag     c
  ||||| |||   ||||||||||||     c
  ACGGA AGA   GGACGACAuguc     u
AG     C   CAC            caacc

Annotation confidence Not enough data

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Genome context

JH425511.1: 201545-201607 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-214-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-214

Accession	MIMAT0042093
Description	Astatotilapia burtoni abu-miR-214 mature miRNA
Sequence	42 - ACAGCAGGCACAGACAGGCAGA - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381