Stem-loop abu-mir-125a-1

Accession

MI0033793

Description

Astatotilapia burtoni abu-mir-125a-1 precursor miRNA

Sequence

4545 reads, 1435.0 reads per million, 1 experiments

UCCCUGAGACCCUUAACCUGUGaugauaugaaaggucaCAGGUGAGGUCCUUGGGAAC
((((.(((..(((((.((((((((..........)))))))))))))..)))))))..

Structure

--    U   AC     A        gaua 
  UCCC GAG  CCUUA CCUGUGau    u
  |||| |||  ||||| ||||||||     
  AGGG UUC  GGAGU GGACacug    g
CA    -   CU     -        gaaa 

Annotation confidence High

Genome context

JH425409.1: 296607-296664 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-125a-1

Mature abu-miR-125a-5p

• Accession: MIMAT0042095
• Description: Astatotilapia burtoni abu-miR-125a-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUUAACCUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-125a-1-3p

• Accession: MIMAT0059825
• Description: Astatotilapia burtoni abu-miR-125a-1-3p mature miRNA
• Sequence: 39 - CAGGUGAGGUCCUUGGGAAC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381