Stem-loop abu-mir-455-1

Accession

MI0033795

Description

Astatotilapia burtoni abu-mir-455-1 precursor miRNA

Sequence

2162 reads, 683.0 reads per million, 1 experiments

UAUGUGCCCUUGGACUACAUCGuggaagccagcaccaUGCAGUCCAUGGGCAUAUACAC
(((((((((.((((((.(((.(((........))).))).)))))).)))))))))...

Structure

---         U      A   C   gaa 
   UAUGUGCCC UGGACU CAU Gug   g
   ||||||||| |||||| ||| |||    
   AUAUACGGG ACCUGA GUa cac   c
CAC         U      C   c   gac 

Annotation confidence High

Genome context

JH425339.1: 2345720-2345778 [-]

Mature abu-miR-455-1-5p

• Accession: MIMAT0042096
• Description: Astatotilapia burtoni abu-miR-455-1-5p mature miRNA
• Sequence: 1 - UAUGUGCCCUUGGACUACAUCG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-455-1-3p

• Accession: MIMAT0059827
• Description: Astatotilapia burtoni abu-miR-455-1-3p mature miRNA
• Sequence: 38 - UGCAGUCCAUGGGCAUAUACAC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381