miRBase entry: abu-mir-200b

Stem-loop abu-mir-200b

Accession

MI0033796

Description

Astatotilapia burtoni abu-mir-200b precursor miRNA

Sequence

caucuuacgaggcagcauuggauaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAU
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure

--    -    g      c      uauca 
  cauc uuac aggcag auugga     u
  |||| |||| |||||| ||||||     c
  GUAG AAUG UCCGUC UAAUcu     a
UA    U    G      A      cuuuc

Annotation confidence Not enough data

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Genome context

JH425562.1: 815241-815300 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-200b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-200b

Accession	MIMAT0042097
Description	Astatotilapia burtoni abu-miR-200b mature miRNA
Sequence	38 - UAAUACUGCCUGGUAAUGAUGAU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381