miRBase entry: abu-mir-27e-1

Stem-loop abu-mir-27e-1

Accession

MI0033799

Description

Astatotilapia burtoni abu-mir-27e-1 precursor miRNA

Sequence

agagcuuagcuaauuggugagcauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure

--a           auug       uugauccc 
   gagcuuagcua    gugagca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguauc

Annotation confidence Not enough data

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Genome context

JH425446.1: 539221-539284 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-27e-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-27e

Accession	MIMAT0042099
Description	Astatotilapia burtoni abu-miR-27e mature miRNA
Sequence	44 - UUCACAGUGGCUAAGUUCAGU - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381