miRBase entry: abu-mir-16b

Stem-loop abu-mir-16b

Accession

MI0033804

Description

Astatotilapia burtoni abu-mir-16b precursor miRNA

Sequence

UAGCAGCACGUAAAUAUUGGAGuuaacacucuagcugaagucuccaguauugaucguacugcugaa
((((((.(((..((((((((((.....((((.....).)))))))))))))...))).))))))..

Structure

--      C   -UA          uuaac   - u 
  UAGCAG ACG   AAUAUUGGAG     acu c a
  |||||| |||   ||||||||||     ||| | g
  gucguc ugc   uuaugaccuc     uga g c
aa      a   uag          -----   a u

Annotation confidence Not enough data

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Genome context

JH425654.1: 105165-105230 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-16b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-16b

Accession	MIMAT0042102
Description	Astatotilapia burtoni abu-miR-16b mature miRNA
Sequence	1 - UAGCAGCACGUAAAUAUUGGAG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381