Stem-loop abu-mir-194a

Accession

MI0033810

Description

Astatotilapia burtoni abu-mir-194a precursor miRNA

Sequence

2204 reads, 696.0 reads per million, 1 experiments

UGUAACAGCAACUCCAUGUGGAagcugugucaguuCCAGUGGAGGUGCUGUUACUUG
.(((((((((.((((((.(((((.(((...)))))))))))))).)))))))))...

Structure

--U         A      G     g   u 
   GUAACAGCA CUCCAU UGGAa cug  
   ||||||||| |||||| ||||| ||| g
   CAUUGUCGU GAGGUG ACCuu gac  
GUU         G      -     -   u 

Annotation confidence High

Genome context

JH425458.1: 831251-831307 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-194a

Mature abu-miR-194a-5p

• Accession: MIMAT0042107
• Description: Astatotilapia burtoni abu-miR-194a-5p mature miRNA
• Sequence: 1 - UGUAACAGCAACUCCAUGUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-194a-3p

• Accession: MIMAT0059829
• Description: Astatotilapia burtoni abu-miR-194a-3p mature miRNA
• Sequence: 36 - CCAGUGGAGGUGCUGUUACUUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381