Stem-loop abu-mir-27a

Accession

MI0033812

Description

Astatotilapia burtoni abu-mir-27a precursor miRNA

Sequence

4779 reads, 1509.0 reads per million, 1 experiments

AGGACUUAGCUCGCUCCGUGAAcaguucagugaaguccugugUUCACAGUGGCUAAGUUCCGC
.(((((((((.((((..(((((((...(((.(....))))))))))))))))))))))))...

Structure

--A         U    CC       guu   u a 
   GGACUUAGC CGCU  GUGAAca   cag g a
   ||||||||| ||||  |||||||   ||| |  
   CUUGAAUCG GUGA  CACUUgu   guc c g
CGC         -    --       ---   - u 

Annotation confidence High

Genome context

JH425323.1: 1539832-1539894 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-27a

Mature abu-miR-27a-5p

• Accession: MIMAT0059831
• Description: Astatotilapia burtoni abu-miR-27a-5p mature miRNA
• Sequence: 1 - AGGACUUAGCUCGCUCCGUGAA - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-27a-3p

• Accession: MIMAT0042109
• Description: Astatotilapia burtoni abu-miR-27a-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCCGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381