miRBase entry: abu-mir-17-1

Stem-loop abu-mir-17-1

Accession

MI0033816

Description

Astatotilapia burtoni abu-mir-17-1 precursor miRNA

Sequence

CAAAGUGCUUACAGUGCAGGUAguacuauggaauaccuacugcaguggaggcacuuacagc
..(((((((..((.(((((...(((........)))...))))).))..))))))).....

Structure

---CA       UA  G     GUA   cua 
     AAGUGCU  CA UGCAG   gua   u
     |||||||  || |||||   |||    
     uucacgg  gu acguc   cau   g
cgaca       ag  g     auc   aag

Annotation confidence Not enough data

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Genome context

JH425469.1: 935694-935754 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-17-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-17

Accession	MIMAT0042113
Description	Astatotilapia burtoni abu-miR-17 mature miRNA
Sequence	1 - CAAAGUGCUUACAGUGCAGGUA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381