Stem-loop abu-mir-1-1

Accession

MI0033819

Description

Astatotilapia burtoni abu-mir-1-1 precursor miRNA

Sequence

acauacuucuuuauguacccauaugaacauaugauagcuaUGGAAUGUAAAGAAGUAUGUAU
((((((((((((((((..(((((...............))))).))))))))))))))))..

Structure

--                ac     ugaaca 
  acauacuucuuuaugu  ccaua      u
  ||||||||||||||||  |||||      a
  UGUAUGAAGAAAUGUA  GGUau      u
UA                -A     cgauag 

Annotation confidence Not enough data

Genome context

JH425323.1: 1961334-1961395 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-1-1

Mature abu-miR-1

• Accession: MIMAT0042115
• Description: Astatotilapia burtoni abu-miR-1 mature miRNA
• Sequence: 41 - UGGAAUGUAAAGAAGUAUGUAU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381