Stem-loop abu-mir-338-3

Accession

MI0033820

Description

Astatotilapia burtoni abu-mir-338-3 precursor miRNA

Sequence

1841 reads, 581.0 reads per million, 1 experiments

AACAAUAUCCUGGUGCUGCCUGAGUgcucccuaaagacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.((......))))))))))))))).))).))))).

Structure

-     U   -         CCU    g  cc 
 AACAA AUC CUGGUGCUG   GAGU cu  c
 ||||| ||| |||||||||   |||| ||   
 UUGUU UAG GACUACGAC   CUca ga  u
G     U   U         ---    -  aa 

Annotation confidence High

Genome context

JH425326.1: 5446559-5446618 [+]

Mature abu-miR-338-3-5p

• Accession: MIMAT0059835
• Description: Astatotilapia burtoni abu-miR-338-3-5p mature miRNA
• Sequence: 1 - AACAAUAUCCUGGUGCUGCCUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature abu-miR-338-3p

• Accession: MIMAT0042116
• Description: Astatotilapia burtoni abu-miR-338-3p mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381