Stem-loop abu-mir-338-2

Accession

MI0033822

Description

Astatotilapia burtoni abu-mir-338-2 precursor miRNA

Sequence

1789 reads, 565.0 reads per million, 1 experiments

AACAACAUCCUGAUGCUGUCUGGGUauguaaagcagaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.(((...)))..))))))))))))).))).))))).

Structure

-     C   -         UCU    -a   a 
 AACAA AUC CUGAUGCUG   GGGU  ugu  
 ||||| ||| |||||||||   ||||  ||| a
 UUGUU UAG GACUACGAC   CUca  acg  
G     U   U         ---    ag   a 

Annotation confidence Not enough data

Genome context

JH425471.1: 877797-877857 [+]

Mature abu-miR-338-2-5p

• Accession: MIMAT0059837
• Description: Astatotilapia burtoni abu-miR-338-2-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGAUGCUGUCUGGGU - 25
• Evidence: experimental ; Illumina [1]

Mature abu-miR-338-3p

• Accession: MIMAT0042116
• Description: Astatotilapia burtoni abu-miR-338-3p mature miRNA
• Sequence: 40 - UCCAGCAUCAGUGAUUUUGUUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381