Stem-loop abu-mir-128-1

Accession

MI0033824

Description

Astatotilapia burtoni abu-mir-128-1 precursor miRNA

Sequence

1710 reads, 540.0 reads per million, 1 experiments

CGGGGCCGGGACGCUGUCUGAGAggccucuaugaaucUCACAGUGAACCGGUCUCUUU
.((((((((..((((((..((((..(......)..))))))))))..))))))))...

Structure

--C        GA      CU    gg cu 
   GGGGCCGG  CGCUGU  GAGA  c  c
   ||||||||  ||||||  ||||  |   
   CUCUGGCC  GUGACA  CUcu  g  u
UUU        AA      --    aa ua 

Annotation confidence High

Genome context

JH425485.1: 402159-402216 [-]

Mature abu-miR-128-1-5p

• Accession: MIMAT0059839
• Description: Astatotilapia burtoni abu-miR-128-1-5p mature miRNA
• Sequence: 1 - CGGGGCCGGGACGCUGUCUGAGA - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-128-3p

• Accession: MIMAT0042118
• Description: Astatotilapia burtoni abu-miR-128-3p mature miRNA
• Sequence: 38 - UCACAGUGAACCGGUCUCUUU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381