miRBase entry: abu-mir-19d

Stem-loop abu-mir-19d

Accession

MI0033827

Description

Astatotilapia burtoni abu-mir-19d precursor miRNA

Sequence

agcuuugcagggugggcagucagccugugugcauaaggaccagcUGUGCAAACCCAUGCAAAACUG
((.((((((((((..(((..((((.((.((.(....).)))))))))))..)))).)))))).)).

Structure

-  c      -    gg   gu    c  u  g a 
 ag uuugca gggu  gca  cagc ug gu c u
 || |||||| ||||  |||  |||| || || |  
 UC AAACGU CCCA  CGU  GUcg ac ca g a
G  A      A    AA   --    -  -  g a

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH425502.1: 77538-77603 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-19d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-19d

Accession	MIMAT0042119
Description	Astatotilapia burtoni abu-miR-19d mature miRNA
Sequence	45 - UGUGCAAACCCAUGCAAAACUG - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381