miRBase entry: abu-mir-216b

Stem-loop abu-mir-216b

Accession

MI0033830

Description

Astatotilapia burtoni abu-mir-216b precursor miRNA

Sequence

UAAUCUCUGCAGGCAACUGUGAuggugcuuuauuuucucacaaucaccuggagagauucug
.(((((((.((((....(((((.((..........)))))))....)))).)))))))...

Structure

--U       G    CAAC     u  ugcu 
   AAUCUCU CAGG    UGUGA gg    u
   ||||||| ||||    ||||| ||     
   uuagaga gucc    acacu cu    u
guc       g    acua     -  uuua

Annotation confidence Not enough data

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Genome context

JH425327.1: 1190468-1190528 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-216b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-216b

Accession	MIMAT0042121
Description	Astatotilapia burtoni abu-miR-216b mature miRNA
Sequence	1 - UAAUCUCUGCAGGCAACUGUGA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381