miRBase entry: abu-mir-23a-2

Stem-loop abu-mir-23a-2

Accession

MI0033832

Description

Astatotilapia burtoni abu-mir-23a-2 precursor miRNA

Sequence

ggguuccuggcaccgugauuugaugcacaaagagaaacaaaaAUCACAUUGCCAGGGAUUUCCA
((((((((((((..(((((((...................)))))))..))))))))))..)).

Structure

-  --          cc       gaugcaca 
 gg  guuccuggca  gugauuu        a
 ||  ||||||||||  |||||||        a
 CC  UAGGGACCGU  CACUAaa        g
A  UU          UA       aacaaaga

Annotation confidence Not enough data

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Genome context

JH425446.1: 538593-538656 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-23a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-23a

Accession	MIMAT0042122
Description	Astatotilapia burtoni abu-miR-23a mature miRNA
Sequence	43 - AUCACAUUGCCAGGGAUUUCCA - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381