Stem-loop abu-mir-107

Accession

MI0033837

Description

Astatotilapia burtoni abu-mir-107 precursor miRNA

Sequence

1200 reads, 379.0 reads per million, 1 experiments

AGCUUCUUUACAGUGUUGCCUUGuggcauggcgaucaAGCAGCAUUGUACAGGGCUAUC
((((.((.(((((((((((.((((.((...)).).)))))))))))))).))))))...

Structure

---    U  U           C   - g  a 
   AGCU CU UACAGUGUUGC UUG u gc  
   |||| || ||||||||||| ||| | || u
   UCGG GA AUGUUACGACG Aac a cg  
CUA    -  C           -   u g  g 

Annotation confidence High

Genome context

JH425630.1: 316144-316202 [+]

Mature abu-miR-107-5p

• Accession: MIMAT0059844
• Description: Astatotilapia burtoni abu-miR-107-5p mature miRNA
• Sequence: 1 - AGCUUCUUUACAGUGUUGCCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-107-3p

• Accession: MIMAT0042126
• Description: Astatotilapia burtoni abu-miR-107-3p mature miRNA
• Sequence: 38 - AGCAGCAUUGUACAGGGCUAUC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381