miRBase entry: abu-mir-19a-1

Stem-loop abu-mir-19a-1


Accession
MI0033840
Description
Astatotilapia burtoni abu-mir-19a-1 precursor miRNA


Sequence

936 reads, 296.0 reads per million, 1 experiments
AGUUUUGCGUAGUUGCGCUGCaagaagaaauaaguUGUGCAAAUCUAUGCAAAACUG
((((((((((((((((((.((............)).))))))..)))))))))))).

Structure
-            --      U  aagaa 
 AGUUUUGCGUAG  UUGCGC GC     g
 ||||||||||||  |||||| ||      
 UCAAAACGUAUC  AACGUG ug     a
G            UA      U  aauaa 


Annotation confidence High
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Genome context
JH425363.1: 1164631-1164687 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from abu-mir-19a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-19a-1-5p

Accession MIMAT0059846
Description Astatotilapia burtoni abu-miR-19a-1-5p mature miRNA
Sequence 1 - AGUUUUGCGUAGUUGCGCUGC - 21
Evidence experimental
Illumina [1]

Mature abu-miR-19a-3p

Accession MIMAT0042129
Description Astatotilapia burtoni abu-miR-19a-3p mature miRNA
Sequence 36 - UGUGCAAAUCUAUGCAAAACUG - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381