miRBase entry: abu-mir-19a-1

Stem-loop abu-mir-19a-1

Accession

MI0033840

Description

Astatotilapia burtoni abu-mir-19a-1 precursor miRNA

Sequence

aguuuugcguaguugcgcugcaagaagaaauaaguUGUGCAAAUCUAUGCAAAACUG
((((((((((((((((((.((............)).))))))..)))))))))))).

Structure

-            --      u  aagaa 
 aguuuugcguag  uugcgc gc     g
 ||||||||||||  |||||| ||      
 UCAAAACGUAUC  AACGUG ug     a
G            UA      U  aauaa

Annotation confidence Not enough data

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Genome context

JH425363.1: 1164631-1164687 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from abu-mir-19a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-19a

Accession	MIMAT0042129
Description	Astatotilapia burtoni abu-miR-19a mature miRNA
Sequence	36 - UGUGCAAAUCUAUGCAAAACUG - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381