miRBase entry: abu-mir-23b

Stem-loop abu-mir-23b

Accession

MI0033847

Description

Astatotilapia burtoni abu-mir-23b precursor miRNA

Sequence

aggguuccuggcgugcugauuugugacuuaugauaaaAUCACAUUGCCAGGGAUUACC
..(((((((((((((.((((((.............)))))))).)))))))))))...

Structure

-ag           -  c      gugac 
   gguuccuggcg ug ugauuu     u
   ||||||||||| || ||||||     u
   UUAGGGACCGU AC ACUAaa     a
CCA           U  -      auagu

Annotation confidence Not enough data

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Genome context

JH425348.1: 679727-679784 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-23b

Accession	MIMAT0042134
Description	Astatotilapia burtoni abu-miR-23b mature miRNA
Sequence	38 - AUCACAUUGCCAGGGAUUACC - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381