Stem-loop abu-mir-7-1

Accession

MI0033852

Description

Astatotilapia burtoni abu-mir-7-1 precursor miRNA

Sequence

628 reads, 198.0 reads per million, 1 experiments

UGGAAGACUAGUGAUUUUGUUGUuuuuaguuagagcaaccgaCAACAAAUCACAGUCUGCCAA
(((.(((((.(((((((.((((((....((....))....)))))))))))))))))).))).

Structure

-   A     A       U      uuua  u 
 UGG AGACU GUGAUUU GUUGUu    gu a
 ||| ||||| ||||||| ||||||    ||  
 ACC UCUGA CACUAAA CAACag    cg g
A   G     -       -      ccaa  a 

Annotation confidence Not enough data

Genome context

JH425335.1: 1379164-1379226 [-]

Mature abu-miR-7-5p

• Accession: MIMAT0042139
• Description: Astatotilapia burtoni abu-miR-7-5p mature miRNA
• Sequence: 1 - UGGAAGACUAGUGAUUUUGUUGU - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-7-1-3p

• Accession: MIMAT0059851
• Description: Astatotilapia burtoni abu-miR-7-1-3p mature miRNA
• Sequence: 43 - CAACAAAUCACAGUCUGCCAA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381