miRBase entry: abu-mir-132-1

Stem-loop abu-mir-132-1

Accession

MI0033856

Description

Astatotilapia burtoni abu-mir-132-1 precursor miRNA

Sequence

accguggcauuagauuguuacuguaguaacagcaccaguggUAACAGUCUACAGCCAUGGUC
((((((((..((((((((((((((.((....))))....))))))))))))..)))))))).

Structure

-        au            ----  a  a 
 accguggc  uagauuguuacu    gu gu a
 ||||||||  ||||||||||||    || ||  
 UGGUACCG  AUCUGACAAUgg    ca cg c
C        AC            ugac  -  a

Annotation confidence Not enough data

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Genome context

JH425460.1: 504781-504842 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-132-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-132-3p

Accession	MIMAT0042142
Description	Astatotilapia burtoni abu-miR-132-3p mature miRNA
Sequence	42 - UAACAGUCUACAGCCAUGGUC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381