Stem-loop abu-mir-132-1

Accession

MI0033856

Description

Astatotilapia burtoni abu-mir-132-1 precursor miRNA

Sequence

426 reads, 135.0 reads per million, 1 experiments

ACCGUGGCAUUAGAUUGUUACUguaguaacagcaccaguggUAACAGUCUACAGCCAUGGUC
((((((((..((((((((((((((.((....))))....))))))))))))..)))))))).

Structure

-        AU            ----  a  a 
 ACCGUGGC  UAGAUUGUUACU    gu gu a
 ||||||||  ||||||||||||    || ||  
 UGGUACCG  AUCUGACAAUgg    ca cg c
C        AC            ugac  -  a 

Annotation confidence Not enough data

Genome context

JH425460.1: 504781-504842 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-132-1

Mature abu-miR-132-1-5p

• Accession: MIMAT0059872
• Description: Astatotilapia burtoni abu-miR-132-1-5p mature miRNA
• Sequence: 1 - ACCGUGGCAUUAGAUUGUUACU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-132-3p

• Accession: MIMAT0042142
• Description: Astatotilapia burtoni abu-miR-132-3p mature miRNA
• Sequence: 42 - UAACAGUCUACAGCCAUGGUC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381