Stem-loop abu-mir-7-3

Accession

MI0033857

Description

Astatotilapia burtoni abu-mir-7-3 precursor miRNA

Sequence

407 reads, 129.0 reads per million, 1 experiments

UGGAAGACUAGUGAUUUUGUUGUgacgcugaucaaagaaCAACAAGUCCCAGUCUGCCUCU
.((.(((((.(.(((((.(((((...............))))))))))).))))).))...

Structure

--U  A     A U     U     gacgcu 
   GG AGACU G GAUUU GUUGU      g
   || ||||| | ||||| |||||      a
   CC UCUGA C CUGAA CAACa      u
UCU  G     C -     -     agaaac 

Annotation confidence High

Genome context

JH425358.1: 1124473-1124533 [-]

Mature abu-miR-7-5p

• Accession: MIMAT0042139
• Description: Astatotilapia burtoni abu-miR-7-5p mature miRNA
• Sequence: 1 - UGGAAGACUAGUGAUUUUGUUGU - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-7-3-3p

• Accession: MIMAT0059850
• Description: Astatotilapia burtoni abu-miR-7-3-3p mature miRNA
• Sequence: 40 - CAACAAGUCCCAGUCUGCCUCU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381