Stem-loop abu-mir-196a-1

Accession

MI0033861

Description

Astatotilapia burtoni abu-mir-196a-1 precursor miRNA

Sequence

361 reads, 114.0 reads per million, 1 experiments

UAGGUAGUUUCAUGUUGUUGGGguccauuucuaacuCUGCAACAUGAAACUGUCUUA
.(((((((((((((((((.(((............))).)))))))))))))))))..

Structure

-U                 U   gucca 
  AGGUAGUUUCAUGUUGU GGG     u
  ||||||||||||||||| |||      
  UCUGUCAAAGUACAACG Cuc     u
AU                 U   aaucu 

Annotation confidence Not enough data

Genome context

JH425419.1: 1630181-1630237 [-]

Mature abu-miR-196a-5p

• Accession: MIMAT0042146
• Description: Astatotilapia burtoni abu-miR-196a-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-196a-1-3p

• Accession: MIMAT0059865
• Description: Astatotilapia burtoni abu-miR-196a-1-3p mature miRNA
• Sequence: 37 - CUGCAACAUGAAACUGUCUUA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381