Stem-loop abu-mir-139

Accession

MI0033863

Description

Astatotilapia burtoni abu-mir-139 precursor miRNA

Sequence

403 reads, 127.0 reads per million, 1 experiments

UCUACAGUGCAUGUGUCUCCAGUauguuagugaugcuacUGGAGACCCAGCUCUGUUGGAAU
(((((((.((.((.((((((((((.((.......)))))))))))).)))).))).))))..

Structure

--    -   U  A  U          u  ua 
  UCUA CAG GC UG GUCUCCAGUa gu  g
  |||| ||| || || |||||||||| ||  u
  AGGU GUC CG AC CAGAGGUcau cg  g
UA    U   U  -  C          -  ua 

Annotation confidence High

Genome context

JH425474.1: 406615-406676 [+]

Mature abu-miR-139-5p

• Accession: MIMAT0042148
• Description: Astatotilapia burtoni abu-miR-139-5p mature miRNA
• Sequence: 1 - UCUACAGUGCAUGUGUCUCCAGU - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-139-3p

• Accession: MIMAT0059853
• Description: Astatotilapia burtoni abu-miR-139-3p mature miRNA
• Sequence: 40 - UGGAGACCCAGCUCUGUUGGAAU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381