Stem-loop abu-mir-22c

Accession

MI0033865

Description

Astatotilapia burtoni abu-mir-22c precursor miRNA

Sequence

380 reads, 120.0 reads per million, 1 experiments

CGUUCUUCACUGGCUAGCUUUAUGucccacgccccacacuaAAGCUGCCAGUUGAAGAGCUGU
.(((((((((((((.((((((((((..........))).)))))))))))).))))))))...

Structure

--C        -     U       -   ccca 
   GUUCUUCA CUGGC AGCUUUA UGu    c
   |||||||| ||||| ||||||| |||     
   CGAGAAGU GACCG UCGAAau aca    g
UGU        U     -       c   cccc 

Annotation confidence High

Genome context

JH425603.1: 350498-350560 [+]

Mature abu-miR-22c-5p

• Accession: MIMAT0059854
• Description: Astatotilapia burtoni abu-miR-22c-5p mature miRNA
• Sequence: 1 - CGUUCUUCACUGGCUAGCUUUAUG - 24
• Evidence: experimental ; Illumina [1]

Mature abu-miR-22c-3p

• Accession: MIMAT0042150
• Description: Astatotilapia burtoni abu-miR-22c-3p mature miRNA
• Sequence: 42 - AAGCUGCCAGUUGAAGAGCUGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381