Stem-loop abu-mir-24a-4

Accession

MI0033866

Description

Astatotilapia burtoni abu-mir-24a-4 precursor miRNA

Sequence

509 reads, 161.0 reads per million, 1 experiments

UGCCUACUGAGCUGAUAACAGUUagauguuaacaagcacUGGCUCAGUUCAGCAGGAAC
..(((.(((((((((.....(((((.((((....)))))))))))))))))).)))...

Structure

-UG   A         UAACA     a    a 
   CCU CUGAGCUGA     GUUag uguu a
   ||| |||||||||     ||||| ||||  
   GGA GACUUGACU     CGGUc acga c
CAA   C         -----     -    a 

Annotation confidence High

Genome context

JH425323.1: 1542025-1542083 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-24a-4

Mature abu-miR-24a-4-5p

• Accession: MIMAT0059855
• Description: Astatotilapia burtoni abu-miR-24a-4-5p mature miRNA
• Sequence: 1 - UGCCUACUGAGCUGAUAACAGUU - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-24a-3p

• Accession: MIMAT0042140
• Description: Astatotilapia burtoni abu-miR-24a-3p mature miRNA
• Sequence: 40 - UGGCUCAGUUCAGCAGGAAC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381